GitHub - ArimaGenomics/CHiC: Arima Capture HiC pipeline (Arima …
This pipeline is for analyzing capture HiC data with HiCUP and CHiCAGO pipelines for generating Arima Genomics QC metrics and output data files. The pipeline runs the standard HiCUP and CHiCAGO …
CHiC/README.md at main · ArimaGenomics/CHiC · GitHub
This pipeline is for analyzing capture HiC data with HiCUP and CHiCAGO pipelines for generating Arima Genomics QC metrics and output data files. The pipeline runs the standard HiCUP and CHiCAGO …
CHiC/Arima-CHiC-v1.5.sh at main · ArimaGenomics/CHiC
The parameter setting should approximately reflect the maximum distance, at which the power-law distance dependence is still observable. threads=12 # number of threads to run HiCUP and …
CHiC/chicagoTools.tar.gz at main · ArimaGenomics/CHiC · GitHub
Arima Capture HiC pipeline (Arima-CHiC). Contribute to ArimaGenomics/CHiC development by creating an account on GitHub.
Arima-SV-Pipeline/Arima-SV-Pipeline-v1.3.sh at main - GitHub
# bash Arima-SV-Pipeline-v1.3.sh -W 1 -B 1 -J 1 -H 0 -a /home/xiangz/tools/bowtie2-2.3.4.3-linux-x86_64/bowtie2 -b /home/xiangz/tools/hic_breakfinder/bin/ -w /home/xiangz/tools/HiCUP-0.8.0/ -j …